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All GlycoMotif data is available from the SPARQL endpoint:

  https://glycomotif.glyomics.org/glycomotif/sparql/query

Single Motif

PREFIX glycomotif: <http://glyomics.org/glycomotif#>

SELECT ?collectionid ?accession ?property ?value
WHERE {
  ?collection a glycomotif:Collection .
  ?collection glycomotif:id ?collectionid .

  ?motif a glycomotif:Motif .
  ?motif glycomotif:accession ?accession .
  ?motif glycomotif:incollection ?collection . 

  ?motif ?property ?value .

  ?collection glycomotif:id "GGM" .
  ?motif glycomotif:accession "000001" .
}

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Motif Publications

PREFIX glycomotif: <http://glyomics.org/glycomotif#>

SELECT ?collectionid ?accession ?pmid
WHERE {
  ?collection a glycomotif:Collection .
  ?collection glycomotif:id ?collectionid .

  ?motif a glycomotif:Motif .
  ?motif glycomotif:accession ?accession .
  ?motif glycomotif:incollection ?collection . 

  ?motif glycomotif:reference ?publication .
  ?publication glycomotif:pmid ?pmid .

  ?collection glycomotif:id "GGM" .
  ?motif glycomotif:accession "000001" .
}

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Motif Keywords

PREFIX glycomotif: <http://glyomics.org/glycomotif#>

SELECT ?collectionid ?accession ?keyword
WHERE {
  ?collection a glycomotif:Collection .
  ?collection glycomotif:id ?collectionid .

  ?motif a glycomotif:Motif .
  ?motif glycomotif:accession ?accession .
  ?motif glycomotif:incollection ?collection . 

  ?motif glycomotif:haskeyword ?keyworduri .
  ?keyworduri glycomotif:name ?keyword .

  ?collection glycomotif:id "GGM" .
  ?motif glycomotif:accession "000001" .
}

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Motif Alignments

PREFIX glycomotif: <http://glyomics.org/glycomotif#>

SELECT ?collectionid ?accession ?motif_gtc_acc ?alignment_type ?structure_gtc_acc ?alignment_isstrict
WHERE {
    ?collection a glycomotif:Collection .
    ?collection glycomotif:id ?collectionid .
    
    ?motif a glycomotif:Motif .
    ?motif glycomotif:accession ?accession .
    ?motif glycomotif:incollection ?collection .

    ?motif glycomotif:glytoucan ?motif_gtc_acc .
    ?motif glycomotif:alignment ?alignment_type .

    ?alignment glycomotif:motif_accession ?motif_gtc_acc .
    ?alignment glycomotif:alignment_type ?alignment_type .
    ?alignment glycomotif:structure_accession ?structure_gtc_acc .
    ?alignment glycomotif:strict ?alignment_isstrict .

    ?collection glycomotif:id "GGM" .
    ?motif glycomotif:accession "000001" .
    ?alignment glycomotif:strict true .
}

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Motif Collection

PREFIX glycomotif: <http://glyomics.org/glycomotif#>

SELECT ?collectionid ?accession ?name ?redend ?aglycon ?alignment
WHERE {
  ?collection a glycomotif:Collection .
  ?collection glycomotif:id ?collectionid .

  ?motif a glycomotif:Motif .
  ?motif glycomotif:accession ?accession .
  ?motif glycomotif:incollection ?collection . 

  ?motif glycomotif:alignment ?alignment .
  OPTIONAL { ?motif glycomotif:preferred_name ?name }
  OPTIONAL { ?motif glycomotif:aglycon ?aglycon }
  OPTIONAL { ?motif glycomotif:reducingend ?redend }

  ?collection glycomotif:id "GGM" 
}

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Motif Collection Alignments

PREFIX glycomotif: <http://glyomics.org/glycomotif#>

SELECT ?collectionid ?accession ?motif_gtc_acc ?alignment_type ?structure_gtc_acc ?alignment_isstrict
WHERE {
    ?collection a glycomotif:Collection .
    ?collection glycomotif:id ?collectionid .
    
    ?motif a glycomotif:Motif .
    ?motif glycomotif:accession ?accession .
    ?motif glycomotif:incollection ?collection .

    ?motif glycomotif:glytoucan ?motif_gtc_acc .
    ?motif glycomotif:alignment ?alignment_type .

    ?alignment glycomotif:motif_accession ?motif_gtc_acc .
    ?alignment glycomotif:alignment_type ?alignment_type .
    ?alignment glycomotif:structure_accession ?structure_gtc_acc .
    ?alignment glycomotif:strict ?alignment_isstrict .

    ?collection glycomotif:id "GGM" .
}
LIMIT 1000

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