2 - Study Summary

Biological Samples 40
Quantiation Workflow TMT-11
Analytical Fraction Phosphoproteome
Biological Samples per Analytical Sample 10
Analytical Samples 4
Fractions per Analytical Sample 6
Spectral Datafiles 24
MS/MS Spectra 1,268,872
Identified MS/MS Spectra (1% FDR) 121,599
Phosphosites 8,099
Peptides 27,778
Proteins (0.09% FDR) 2,807

3 - Analytical Samples

Index Analytical sample Fractions
01 01_Gilteritinib_Resistance_Phosphoproteome 6
02 02_Gilteritinib_Resistance_Phosphoproteome 6
03 03_Gilteritinib_Resistance_Phosphoproteome 6
04 04_Gilteritinib_Resistance_Phosphoproteome 6

4 - Proteins

4.1 - Proteins by Analytical Sample

Number of identified proteins by analytical sample.

4.2 - Cumulative Proteins by Analytical Sample

Cumulative number of identified proteins by analytical sample.

4.3 - Common Proteins by Analytical Sample

Number of identified proteins in common by analytical sample.

5 - Peptides

5.1 - Peptides for Fractions by Analytical Sample

Boxplot of number of distinct peptides for fractions by analytical sample.

5.2 - Peptides for Analytical Samples by Fraction

Number of distinct peptides for analytical samples by fraction.

6 - MS/MS Spectra

6.1 - MS/MS Spectra by Analytical Sample

Number of MS/MS spectra by analytical sample.

6.2 - MS/MS Spectra for Fractions by Analytical Sample

Boxplot of number of MS/MS spectra for fractions by analytical sample.

6.3 - MS/MS Spectra for Analytical Samples by Fraction

Number of MS/MS spectra for analytical samples by fraction.

7 - MS/MS Precursors

7.1 - Precursor Intensity Percentiles for Analytical Samples by Fraction

The 5%, 25%, 50%, 75%, and 95% percentiles of log10(precursor intensity) values for analytical samples by fraction.

7.2 - Precursor m/z Percentiles for Analytical Samples by Fraction

The 5%, 25%, 50%, 75%, and 95% percentiles of precursor m/z values for analytical samples by fraction.

7.3 - Precursor Molecular Weight Percentiles for Analytical Samples by Fraction

The 5%, 25%, 50%, 75%, and 95% percentiles of precursor molecular weight values for analytical samples by fraction.

7.4 - Precursor Charge State Distribution

Overall precursor charge state distribution.

7.5 - MS/MS Spectra per Cycle Percentiles for Analytical Samples by Fraction

The 5%, 25%, 50%, 75%, and 95% percentiles of the number of MS/MS spectra per cycle for analytical samples by fraction.

7.6 - Peptide Redundancy Percentiles for Analytical Samples by Fraction

The 5%, 25%, 50%, 75%, and 95% percentiles of peptide redundancy for analytical samples by fraction.

8 - Chromatography

8.1 - Retention Time Percentiles for Analytical Sample by Fraction

The 5%, 25%, 50%, 75%, and 95% percentiles of chromatographic retention time for analytical samples by fraction.

9 - Batch Effects

9.1 - Analytical Sample Batch Effect

PCA analysis of quantiation matrix with biological samples colored by analytical sample.

9.2 - Isobaric Label Batch Effect

PCA analysis of quantiation matrix with biological samples colored by isobaric label.

For more information about Plotly Modebar, click here.